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ASM411625v1

Organism name:
Clostridium perfringens (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 79385-1
BioSample:
SAMN08634681
BioProject:
PRJNA436899
Submitter:
Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta
Date:
2019/01/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004116255.1 (latest)
RefSeq assembly accession:
GCF_004116255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRFP01
Assembly method:
Galaxy v. 0.4.1.1
Expected final version:
no
Genome coverage:
1x
Sequencing technology:
Illumina MiSeq

IDs: 2221341 [UID] 8358908 [GenBank] 8383568 [RefSeq]

See Genome Information for Clostridium perfringens

There are 1876 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/02/2018 13:46:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,600
CDS (total)::2,516
Genes (coding)::2,410
CDS (coding)::2,410
Genes (RNA)::84
rRNAs::2, 3, 2 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::3, 2 (16S, 23S)
tRNAs::73
ncRNAs::4
Pseudo Genes (total)::106
Pseudo Genes (ambiguous residues)::0 of 106
Pseudo Genes (frameshifted)::30 of 106
Pseudo Genes (incomplete)::66 of 106
Pseudo Genes (internal stop)::38 of 106
Pseudo Genes (multiple problems)::25 of 106
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,780,084
Total ungapped length2,780,084
Number of contigs115
Contig N5054,539
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)115

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,780,0841152,780,08454,53900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium perfringensClostridium perfringens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016027375.1Clostridium perfringenstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016027375.1Clostridium perfringenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.2190.7375.17
Best-match type97.2190.7375.17

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna