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ASM637244v1

Organism name:
Vibrio parahaemolyticus (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: D6_3
BioSample:
SAMN07338066
BioProject:
PRJNA393608
Submitter:
Beijing Institute of Microbiology and Epidemiology
Date:
2019/06/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_006372445.1 (latest)
RefSeq assembly accession:
GCF_006372445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NNIS01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina Hiseq 4000

IDs: 3516021 [UID] 11356408 [GenBank] 11518078 [RefSeq]

See Genome Information for Vibrio parahaemolyticus

There are 10678 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/21/2017 15:14:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,082
CDS (total)::5,016
Genes (coding)::4,921
CDS (coding)::4,921
Genes (RNA)::66
rRNAs::2, 1 (5S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::1 (23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::95
Pseudo Genes (ambiguous residues)::0 of 95
Pseudo Genes (frameshifted)::40 of 95
Pseudo Genes (incomplete)::34 of 95
Pseudo Genes (internal stop)::39 of 95
Pseudo Genes (multiple problems)::16 of 95
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,080,812
Total ungapped length5,080,812
Number of contigs619
Contig N5028,021
Contig L5049
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)619

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,080,8126195,080,81228,02100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio parahaemolyticusVibrio parahaemolyticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000813305.1Vibrio parahaemolyticus NBRC 12711type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000813305.1Vibrio parahaemolyticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5091.1892.81
Best-match type98.5091.1892.81

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna