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ASM637521v1

Organism name:
Vibrio parahaemolyticus (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: B4_8
BioSample:
SAMN07337924
BioProject:
PRJNA393608
Submitter:
Beijing Institute of Microbiology and Epidemiology
Date:
2019/06/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_006375215.1 (latest)
RefSeq assembly accession:
GCF_006375215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NNOE01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina Hiseq 4000

IDs: 3517441 [UID] 11359238 [GenBank] 11514228 [RefSeq]

See Genome Information for Vibrio parahaemolyticus

There are 10678 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/21/2017 18:54:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,021
CDS (total)::4,955
Genes (coding)::4,846
CDS (coding)::4,846
Genes (RNA)::66
rRNAs::1, 2 (5S, 23S)
complete rRNAs::
partial rRNAs::1, 2 (5S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::109
Pseudo Genes (ambiguous residues)::0 of 109
Pseudo Genes (frameshifted)::44 of 109
Pseudo Genes (incomplete)::51 of 109
Pseudo Genes (internal stop)::32 of 109
Pseudo Genes (multiple problems)::17 of 109
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,763,949
Total ungapped length4,763,949
Number of contigs1,391
Contig N508,574
Contig L50156
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,391

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,763,9491,3914,763,9498,57400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio parahaemolyticusVibrio parahaemolyticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000813305.1Vibrio parahaemolyticus NBRC 12711type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000813305.1Vibrio parahaemolyticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5195.3290.97
Best-match type98.5195.3290.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna