U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



HLAgriLifeRun1

Organism name:
Haemaphysalis longicornis (longhorned tick)
Isolate:
New Zealand Cattle Tick FotT
Sex:
female
BioSample:
SAMN11539514
BioProject:
PRJNA540490
Submitter:
New Zealand-ARS-Massey University
Date:
2019/08/28
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genome length too large
GenBank assembly accession:
GCA_008122185.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
VFIB01
Assembly method:
Canu v. 1.7
Expected final version:
yes
Genome coverage:
55.0x
Sequencing technology:
PacBio Sequel

IDs: 4528111 [UID] 13447658 [GenBank]

See Genome Information for Haemaphysalis longicornis

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length7,362,360,965
Total ungapped length7,362,360,965
Number of contigs34,208
Contig N50515,769
Contig L503,395
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34,208

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,362,360,96534,2087,362,360,965515,76900