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ASM841630v1

Organism name:
Bacteroides caccae (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A1
BioSample:
SAMN11943387
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_008416305.1 (latest)
RefSeq assembly accession:
GCF_008416305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VVXN01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
66.29x
Sequencing technology:
Illumina NextSeq

IDs: 4580241 [UID] 13765028 [GenBank] 13932508 [RefSeq]

See Genome Information for Bacteroides caccae

There are 190 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/13/2019 12:38:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,634
CDSs (total)::4,570
Genes (coding)::4,386
CDSs (with protein)::4,386
Genes (RNA)::64
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::59
ncRNAs::2
Pseudo Genes (total)::184
CDSs (without protein)::184
Pseudo Genes (ambiguous residues)::0 of 184
Pseudo Genes (frameshifted)::92 of 184
Pseudo Genes (incomplete)::103 of 184
Pseudo Genes (internal stop)::46 of 184
Pseudo Genes (multiple problems)::49 of 184
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,437,198
Total ungapped length5,437,198
Number of contigs79
Contig N50193,099
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)79

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,437,198795,437,198193,09900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides caccaeBacteroides caccae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000169015.1Bacteroides caccae ATCC 43185type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000169015.1Bacteroides caccaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4674.4388.65
Best-match type99.4674.4388.65

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna