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ASM842258v1

Organism name:
Akkermansia sp. BIOML-A3 (verrucomicrobia)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A3
BioSample:
SAMN11943048
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_008422585.1 (latest)
RefSeq assembly accession:
GCF_008422585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VVKQ01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
34.234x
Sequencing technology:
Illumina NextSeq

IDs: 4585001 [UID] 13771778 [GenBank] 13932928 [RefSeq]

See Genome Information for Akkermansia sp. BIOML-A3

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/11/2019 21:35:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,583
CDSs (total)::2,527
Genes (coding)::2,499
CDSs (with protein)::2,499
Genes (RNA)::56
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::28
CDSs (without protein)::28
Pseudo Genes (ambiguous residues)::1 of 28
Pseudo Genes (frameshifted)::13 of 28
Pseudo Genes (incomplete)::16 of 28
Pseudo Genes (internal stop)::9 of 28
Pseudo Genes (multiple problems)::8 of 28
CRISPR Arrays::7
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,122,686
Total ungapped length3,122,596
Gaps between scaffolds0
Number of scaffolds25
Scaffold N50275,036
Scaffold L504
Number of contigs31
Contig N50223,679
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,122,686253,122,596275,03660

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Akkermansia sp. BIOML-A3Akkermansia sp. BIOML-A3

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_026072915.1Akkermansia biwaensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.1285.2383.81

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna