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Source database (GenBank or RefSeq) File type

ASM842277v1

Organism name:: Akkermansia muciniphila (verrucomicrobia)
Taxonomy check:: OK
Infraspecific name:: Strain: BIOML-A37
BioSample:: SAMN11943037
BioProject:: PRJNA544527
Submitter:: Massachusetts Institute of Technology
Date:: 2019/09/16
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_008422775.1 (latest)
RefSeq assembly accession:: GCF_008422775.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: VVKF01
Assembly method:: SPAdes v. 3.9.1
Expected final version:: no
Genome coverage:: 307.579x
Sequencing technology:: Illumina NextSeq

IDs: 4585101 [UID] 13772018 [GenBank] 13925788 [RefSeq]

See Genome Information for Akkermansia muciniphila

Pathogen Detection Resources

There are 1664 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_008422775.1	=	GCF_008422775.1	ASM842277v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/11/2019 22:18:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,292
CDSs (total)::2,237
Genes (coding)::2,200
CDSs (with protein)::2,200
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::37
CDSs (without protein)::37
Pseudo Genes (ambiguous residues)::0 of 37
Pseudo Genes (frameshifted)::12 of 37
Pseudo Genes (incomplete)::22 of 37
Pseudo Genes (internal stop)::8 of 37
Pseudo Genes (multiple problems)::4 of 37
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,753,150
Total ungapped length	2,752,865
Gaps between scaffolds	0
Number of scaffolds	21
Scaffold N50	324,533
Scaffold L50	4
Number of contigs	23
Contig N50	324,533
Contig L50	4
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	21

	ANI	Query coverage	Subject coverage
Declared type	97.62	89.39	92.37
Best-match type	97.62	89.39	92.37

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ASM842277v1

See Genome Information for Akkermansia muciniphila

Pathogen Detection Resources

There are 1664 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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