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ASM856522v1

Organism name:
Bacteroides salyersiae (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A17
BioSample:
SAMN11943791
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_008565225.1 (latest)
RefSeq assembly accession:
GCF_008565225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VWMR01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
59.825x
Sequencing technology:
Illumina NextSeq

IDs: 4646901 [UID] 13917568 [GenBank] 13998548 [RefSeq]

See Genome Information for Bacteroides salyersiae

There are 87 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/15/2019 10:40:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,722
CDSs (total)::4,652
Genes (coding)::4,529
CDSs (with protein)::4,529
Genes (RNA)::70
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::65
ncRNAs::2
Pseudo Genes (total)::123
CDSs (without protein)::123
Pseudo Genes (ambiguous residues)::0 of 123
Pseudo Genes (frameshifted)::60 of 123
Pseudo Genes (incomplete)::64 of 123
Pseudo Genes (internal stop)::34 of 123
Pseudo Genes (multiple problems)::31 of 123
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,818,347
Total ungapped length5,818,347
Number of contigs116
Contig N50110,721
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)116

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,818,3471165,818,347110,72100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides salyersiaeBacteroides salyersiae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000381365.1Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000381365.1Bacteroides salyersiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1981.5989.41
Best-match type99.1981.5989.41

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna