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ASM856565v1

Organism name:
Bacteroides ovatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A184
BioSample:
SAMN11943772
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_008565655.1 (latest)
RefSeq assembly accession:
GCF_008565655.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VWLY01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
30.48x
Sequencing technology:
Illumina NextSeq

IDs: 4647281 [UID] 13917988 [GenBank] 13995188 [RefSeq]

See Genome Information for Bacteroides ovatus

There are 670 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/15/2019 09:33:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,115
CDSs (total)::6,048
Genes (coding)::5,822
CDSs (with protein)::5,822
Genes (RNA)::67
rRNAs::2, 4, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::3 (16S)
tRNAs::58
ncRNAs::2
Pseudo Genes (total)::226
CDSs (without protein)::226
Pseudo Genes (ambiguous residues)::21 of 226
Pseudo Genes (frameshifted)::102 of 226
Pseudo Genes (incomplete)::100 of 226
Pseudo Genes (internal stop)::46 of 226
Pseudo Genes (multiple problems)::41 of 226
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,312,753
Total ungapped length7,311,414
Gaps between scaffolds0
Number of scaffolds220
Scaffold N5095,572
Scaffold L5024
Number of contigs244
Contig N5084,396
Contig L5028
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)220

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,312,7532207,311,41495,572240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides ovatusBacteroides ovatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154125.1Bacteroides ovatus ATCC 8483suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154125.1Bacteroides ovatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8276.2386.23
Best-match type98.8276.2386.23

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna