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ASM856575v1

Organism name:
Bacteroides ovatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A177
BioSample:
SAMN11943765
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_008565755.1 (latest)
RefSeq assembly accession:
GCF_008565755.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VWLS01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
123.054x
Sequencing technology:
Illumina NextSeq

IDs: 4647331 [UID] 13918088 [GenBank] 13998268 [RefSeq]

See Genome Information for Bacteroides ovatus

There are 670 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/15/2019 09:56:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,080
CDSs (total)::6,012
Genes (coding)::5,762
CDSs (with protein)::5,762
Genes (RNA)::68
rRNAs::2, 3, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (16S)
tRNAs::60
ncRNAs::2
Pseudo Genes (total)::250
CDSs (without protein)::250
Pseudo Genes (ambiguous residues)::0 of 250
Pseudo Genes (frameshifted)::94 of 250
Pseudo Genes (incomplete)::142 of 250
Pseudo Genes (internal stop)::45 of 250
Pseudo Genes (multiple problems)::29 of 250
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,378,516
Total ungapped length7,378,506
Gaps between scaffolds0
Number of scaffolds86
Scaffold N50323,074
Scaffold L509
Number of contigs87
Contig N50323,074
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)86

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,378,516867,378,506323,07410

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides ovatusBacteroides ovatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154125.1Bacteroides ovatus ATCC 8483suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154125.1Bacteroides ovatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8375.6386.34
Best-match type98.8375.6386.34

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna