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ASM856659v1

Organism name:
Bacteroides ovatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A135
BioSample:
SAMN11943723
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_008566595.1 (latest)
RefSeq assembly accession:
GCF_008566595.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VWKC01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
193.805x
Sequencing technology:
Illumina NextSeq

IDs: 4648001 [UID] 13918928 [GenBank] 13999028 [RefSeq]

See Genome Information for Bacteroides ovatus

There are 670 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/15/2019 03:42:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,468
CDSs (total)::6,390
Genes (coding)::6,171
CDSs (with protein)::6,171
Genes (RNA)::78
rRNAs::1, 2, 2 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::71
ncRNAs::2
Pseudo Genes (total)::219
CDSs (without protein)::219
Pseudo Genes (ambiguous residues)::0 of 219
Pseudo Genes (frameshifted)::110 of 219
Pseudo Genes (incomplete)::97 of 219
Pseudo Genes (internal stop)::56 of 219
Pseudo Genes (multiple problems)::40 of 219
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,787,123
Total ungapped length7,787,123
Number of contigs160
Contig N50145,238
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)160

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,787,1231607,787,123145,23800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides ovatusBacteroides ovatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154125.1Bacteroides ovatus ATCC 8483suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154125.1Bacteroides ovatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0662.0074.70
Best-match type97.0662.0074.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna