U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM856687v1

Organism name:
Bacteroides ovatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A121
BioSample:
SAMN11943709
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_008566875.1 (latest)
RefSeq assembly accession:
GCF_008566875.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VWJP01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
113.786x
Sequencing technology:
Illumina NextSeq

IDs: 4648141 [UID] 13919208 [GenBank] 13995888 [RefSeq]

See Genome Information for Bacteroides ovatus

There are 670 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/15/2019 01:17:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,292
CDSs (total)::5,207
Genes (coding)::5,059
CDSs (with protein)::5,059
Genes (RNA)::85
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::1, 2 (16S, 23S)
tRNAs::77
ncRNAs::2
Pseudo Genes (total)::148
CDSs (without protein)::148
Pseudo Genes (ambiguous residues)::0 of 148
Pseudo Genes (frameshifted)::63 of 148
Pseudo Genes (incomplete)::74 of 148
Pseudo Genes (internal stop)::31 of 148
Pseudo Genes (multiple problems)::17 of 148
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,729,289
Total ungapped length6,729,122
Gaps between scaffolds0
Number of scaffolds59
Scaffold N50256,422
Scaffold L506
Number of contigs61
Contig N50256,422
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)59

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,729,289596,729,122256,42220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides ovatusBacteroides ovatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002959635.1Bacteroides ovatussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002959635.1Bacteroides ovatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.2270.8470.90
Best-match type97.2270.8470.90

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna