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ASM856743v1

Organism name:
Bacteroides ovatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A93
BioSample:
SAMN11943681
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_008567435.1 (latest)
RefSeq assembly accession:
GCF_008567435.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VWIN01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
36.276x
Sequencing technology:
Illumina NextSeq

IDs: 4648431 [UID] 13919788 [GenBank] 13997948 [RefSeq]

See Genome Information for Bacteroides ovatus

There are 670 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/14/2019 23:44:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,519
CDSs (total)::5,440
Genes (coding)::5,294
CDSs (with protein)::5,294
Genes (RNA)::79
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 2 (16S, 23S)
tRNAs::68
ncRNAs::2
Pseudo Genes (total)::146
CDSs (without protein)::146
Pseudo Genes (ambiguous residues)::0 of 146
Pseudo Genes (frameshifted)::69 of 146
Pseudo Genes (incomplete)::61 of 146
Pseudo Genes (internal stop)::37 of 146
Pseudo Genes (multiple problems)::18 of 146
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,896,237
Total ungapped length6,896,217
Gaps between scaffolds0
Number of scaffolds183
Scaffold N50236,280
Scaffold L507
Number of contigs184
Contig N50228,691
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)183

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,896,2371836,896,217236,28010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides ovatusBacteroides ovatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002959635.1Bacteroides ovatussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002959635.1Bacteroides ovatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.2269.1170.88
Best-match type97.2269.1170.88

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna