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ASM856879v1

Organism name:
Bacteroides ovatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A14
BioSample:
SAMN11943602
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_008568795.1 (latest)
RefSeq assembly accession:
GCF_008568795.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VWFO01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
101.824x
Sequencing technology:
Illumina NextSeq

IDs: 4652291 [UID] 13921208 [GenBank] 13997308 [RefSeq]

See Genome Information for Bacteroides ovatus

There are 670 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/14/2019 14:28:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,874
CDSs (total)::6,801
Genes (coding)::6,545
CDSs (with protein)::6,545
Genes (RNA)::73
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 2 (16S, 23S)
tRNAs::62
ncRNAs::2
Pseudo Genes (total)::256
CDSs (without protein)::256
Pseudo Genes (ambiguous residues)::6 of 256
Pseudo Genes (frameshifted)::112 of 256
Pseudo Genes (incomplete)::119 of 256
Pseudo Genes (internal stop)::65 of 256
Pseudo Genes (multiple problems)::39 of 256
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,696,619
Total ungapped length7,696,396
Gaps between scaffolds0
Number of scaffolds894
Scaffold N50111,053
Scaffold L5019
Number of contigs904
Contig N50111,053
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)894

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,696,6198947,696,396111,053100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides ovatusBacteroides ovatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002959635.1Bacteroides ovatussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002959635.1Bacteroides ovatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0860.5369.28
Best-match type97.0860.5369.28

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna