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ASM856904v1

Organism name:
Bacteroides intestinalis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A1
BioSample:
SAMN11943587
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_008569045.1 (latest)
RefSeq assembly accession:
GCF_008569045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VWFA01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
37.518x
Sequencing technology:
Illumina NextSeq

IDs: 4652521 [UID] 13921388 [GenBank] 13995108 [RefSeq]

See Genome Information for Bacteroides intestinalis

There are 234 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/14/2019 08:50:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,797
CDSs (total)::4,728
Genes (coding)::4,562
CDSs (with protein)::4,562
Genes (RNA)::69
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
tRNAs::62
ncRNAs::2
Pseudo Genes (total)::166
CDSs (without protein)::166
Pseudo Genes (ambiguous residues)::0 of 166
Pseudo Genes (frameshifted)::62 of 166
Pseudo Genes (incomplete)::99 of 166
Pseudo Genes (internal stop)::39 of 166
Pseudo Genes (multiple problems)::29 of 166
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,052,076
Total ungapped length6,052,076
Number of contigs80
Contig N50179,439
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)80

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,052,076806,052,076179,43900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides intestinalisBacteroides intestinalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000172175.1Bacteroides intestinalis DSM 17393type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000172175.1Bacteroides intestinalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7481.9481.93
Best-match type98.7481.9481.93

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna