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ASM857139v1

Organism name:
Bacteroides finegoldii (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A8
BioSample:
SAMN11943468
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_008571395.1 (latest)
RefSeq assembly accession:
GCF_008571395.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VWAM01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
405.862x
Sequencing technology:
Illumina NextSeq

IDs: 4657301 [UID] 13923738 [GenBank] 13993908 [RefSeq]

See Genome Information for Bacteroides finegoldii

There are 53 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/13/2019 21:53:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,340
CDSs (total)::4,274
Genes (coding)::4,047
CDSs (with protein)::4,047
Genes (RNA)::66
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::227
CDSs (without protein)::227
Pseudo Genes (ambiguous residues)::0 of 227
Pseudo Genes (frameshifted)::103 of 227
Pseudo Genes (incomplete)::130 of 227
Pseudo Genes (internal stop)::56 of 227
Pseudo Genes (multiple problems)::58 of 227
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,999,807
Total ungapped length4,999,782
Gaps between scaffolds0
Number of scaffolds118
Scaffold N50105,799
Scaffold L5012
Number of contigs119
Contig N50105,799
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)118

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,999,8071184,999,782105,79910

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides finegoldiiBacteroides finegoldii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000156195.1Bacteroides finegoldii DSM 17565suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000156195.1Bacteroides finegoldiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.6584.6786.72
Best-match type99.6584.6786.72

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna