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ASM857159v1

Organism name:
Bacteroides faecis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A1
BioSample:
SAMN11943455
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_008571595.1 (latest)
RefSeq assembly accession:
GCF_008571595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VVZZ01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
83.154x
Sequencing technology:
Illumina NextSeq

IDs: 4657861 [UID] 13923948 [GenBank] 13994868 [RefSeq]

See Genome Information for Bacteroides faecis

There are 156 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/13/2019 20:00:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,254
CDSs (total)::5,180
Genes (coding)::4,895
CDSs (with protein)::4,895
Genes (RNA)::74
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::69
ncRNAs::2
Pseudo Genes (total)::285
CDSs (without protein)::285
Pseudo Genes (ambiguous residues)::1 of 285
Pseudo Genes (frameshifted)::94 of 285
Pseudo Genes (incomplete)::196 of 285
Pseudo Genes (internal stop)::44 of 285
Pseudo Genes (multiple problems)::44 of 285
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,268,938
Total ungapped length6,268,789
Gaps between scaffolds0
Number of scaffolds260
Scaffold N5053,941
Scaffold L5036
Number of contigs262
Contig N5053,941
Contig L5036
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)260

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,268,9382606,268,78953,94120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides faecisBacteroides faecis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000226135.2Bacteroides faecis MAJ27type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000226135.2Bacteroides faecistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1882.5584.63
Best-match type99.1882.5584.63

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna