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ASM857191v1

Organism name:
Phocaeicola dorei (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A16
BioSample:
SAMN11943442
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_008571915.1 (latest)
RefSeq assembly accession:
GCF_008571915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VVZM01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
140.086x
Sequencing technology:
Illumina NextSeq

IDs: 4658291 [UID] 13924258 [GenBank] 13994628 [RefSeq]

See Genome Information for Phocaeicola dorei

There are 343 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/13/2019 17:51:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,319
CDSs (total)::4,247
Genes (coding)::4,085
CDSs (with protein)::4,085
Genes (RNA)::72
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::66
ncRNAs::3
Pseudo Genes (total)::162
CDSs (without protein)::162
Pseudo Genes (ambiguous residues)::0 of 162
Pseudo Genes (frameshifted)::80 of 162
Pseudo Genes (incomplete)::82 of 162
Pseudo Genes (internal stop)::44 of 162
Pseudo Genes (multiple problems)::39 of 162
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,204,278
Total ungapped length5,204,152
Gaps between scaffolds0
Number of scaffolds66
Scaffold N50189,282
Scaffold L5010
Number of contigs68
Contig N50189,282
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,204,278665,204,152189,28220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola doreiPhocaeicola dorei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_013009555.1Phocaeicola doreitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013009555.1Phocaeicola doreitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3887.4380.89
Best-match type99.3887.4380.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna