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ASM857212v1

Organism name:
Phocaeicola dorei (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A5
BioSample:
SAMN11943431
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/09/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_008572125.1 (latest)
RefSeq assembly accession:
GCF_008572125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VVZB01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
no
Genome coverage:
198.996x
Sequencing technology:
Illumina NextSeq

IDs: 4658701 [UID] 13924508 [GenBank] 13994768 [RefSeq]

See Genome Information for Phocaeicola dorei

There are 343 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/13/2019 14:59:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,101
CDSs (total)::5,017
Genes (coding)::4,813
CDSs (with protein)::4,813
Genes (RNA)::84
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 2 (16S, 23S)
tRNAs::73
ncRNAs::2
Pseudo Genes (total)::204
CDSs (without protein)::204
Pseudo Genes (ambiguous residues)::0 of 204
Pseudo Genes (frameshifted)::102 of 204
Pseudo Genes (incomplete)::104 of 204
Pseudo Genes (internal stop)::59 of 204
Pseudo Genes (multiple problems)::50 of 204
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,843,668
Total ungapped length5,843,668
Number of contigs238
Contig N50312,150
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)238

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,843,6682385,843,668312,15000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola doreiPhocaeicola dorei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_013009555.1Phocaeicola doreitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013009555.1Phocaeicola doreitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2478.0281.05
Best-match type99.2478.0281.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna