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ASM872645v1

Organism name:
Corynebacterium amycolatum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB7760
BioSample:
SAMN12797034
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2019/09/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_008726455.1 (latest)
RefSeq assembly accession:
GCF_008726455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VYVQ01
Assembly method:
SPAdes v. 3.11.1
Expected final version:
yes
Genome coverage:
28.16x
Sequencing technology:
Illumina MiSeq

IDs: 4743691 [UID] 14132928 [GenBank] 14251078 [RefSeq]

See Genome Information for Corynebacterium amycolatum

There are 50 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/23/2019 19:00:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,141
CDSs (total)::2,078
Genes (coding)::2,045
CDSs (with protein)::2,045
Genes (RNA)::63
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (5S)
tRNAs::54
ncRNAs::3
Pseudo Genes (total)::33
CDSs (without protein)::33
Pseudo Genes (ambiguous residues)::0 of 33
Pseudo Genes (frameshifted)::13 of 33
Pseudo Genes (incomplete)::23 of 33
Pseudo Genes (internal stop)::4 of 33
Pseudo Genes (multiple problems)::6 of 33
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,422,276
Total ungapped length2,422,276
Number of contigs65
Contig N5065,270
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)65

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,422,276652,422,27665,27000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium amycolatumCorynebacterium amycolatum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014335175.1Corynebacterium amycolatumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014335175.1Corynebacterium amycolatumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.9492.4591.35
Best-match type94.9492.4591.35

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna