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ASM901914v1

Organism name:
Bacteroides uniformis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A87
BioSample:
SAMN11944118
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_009019145.1 (latest)
RefSeq assembly accession:
GCF_009019145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WCWN01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
554.335x
Sequencing technology:
Illumina NextSeq

IDs: 4883781 [UID] 14461318 [GenBank] 14563938 [RefSeq]

See Genome Information for Bacteroides uniformis

There are 765 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/09/2019 22:01:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,323
CDSs (total)::4,251
Genes (coding)::4,091
CDSs (with protein)::4,091
Genes (RNA)::72
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
tRNAs::65
ncRNAs::2
Pseudo Genes (total)::160
CDSs (without protein)::160
Pseudo Genes (ambiguous residues)::0 of 160
Pseudo Genes (frameshifted)::58 of 160
Pseudo Genes (incomplete)::98 of 160
Pseudo Genes (internal stop)::30 of 160
Pseudo Genes (multiple problems)::25 of 160
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,890,407
Total ungapped length4,890,407
Number of contigs76
Contig N50206,273
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)76

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,890,407764,890,407206,27300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides uniformisBacteroides uniformis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900107315.1Bacteroides uniformissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900107315.1Bacteroides uniformissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5472.8376.84
Best-match type98.5472.8376.84

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna