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ASM901954v1

Organism name:
Bacteroides uniformis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A66
BioSample:
SAMN11944097
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_009019545.1 (latest)
RefSeq assembly accession:
GCF_009019545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WCVT01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
34.903x
Sequencing technology:
Illumina NextSeq

IDs: 4883981 [UID] 14461728 [GenBank] 14632028 [RefSeq]

See Genome Information for Bacteroides uniformis

There are 765 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/09/2019 20:10:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,539
CDSs (total)::4,484
Genes (coding)::4,278
CDSs (with protein)::4,278
Genes (RNA)::55
rRNAs::1, 2, 2 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::48
ncRNAs::2
Pseudo Genes (total)::206
CDSs (without protein)::206
Pseudo Genes (ambiguous residues)::0 of 206
Pseudo Genes (frameshifted)::108 of 206
Pseudo Genes (incomplete)::86 of 206
Pseudo Genes (internal stop)::31 of 206
Pseudo Genes (multiple problems)::19 of 206
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,203,919
Total ungapped length5,203,919
Number of contigs252
Contig N5048,902
Contig L5034
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)252

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,203,9192525,203,91948,90200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides uniformisBacteroides uniformis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154205.1Bacteroides uniformis ATCC 8492suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154205.1Bacteroides uniformissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9184.5293.23
Best-match type99.9184.5293.23

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna