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ASM901983v1

Organism name:
Bacteroides uniformis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A51
BioSample:
SAMN11944082
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_009019835.1 (latest)
RefSeq assembly accession:
GCF_009019835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WCVE01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
180.272x
Sequencing technology:
Illumina NextSeq

IDs: 4884141 [UID] 14462038 [GenBank] 14632688 [RefSeq]

See Genome Information for Bacteroides uniformis

There are 765 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/09/2019 18:22:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,416
CDSs (total)::4,351
Genes (coding)::4,118
CDSs (with protein)::4,118
Genes (RNA)::65
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::233
CDSs (without protein)::233
Pseudo Genes (ambiguous residues)::0 of 233
Pseudo Genes (frameshifted)::117 of 233
Pseudo Genes (incomplete)::108 of 233
Pseudo Genes (internal stop)::37 of 233
Pseudo Genes (multiple problems)::28 of 233
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,066,586
Total ungapped length5,066,559
Gaps between scaffolds0
Number of scaffolds115
Scaffold N5091,511
Scaffold L5016
Number of contigs116
Contig N5091,511
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)115

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,066,5861155,066,55991,51110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides uniformisBacteroides uniformis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154205.1Bacteroides uniformis ATCC 8492suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154205.1Bacteroides uniformissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9086.9193.34
Best-match type99.9086.9193.34

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna