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ASM902003v1

Organism name:
Bacteroides uniformis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A42
BioSample:
SAMN11944073
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_009020035.1 (latest)
RefSeq assembly accession:
GCF_009020035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WCUV01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
177.692x
Sequencing technology:
Illumina NextSeq

IDs: 4884231 [UID] 14462228 [GenBank] 14547998 [RefSeq]

See Genome Information for Bacteroides uniformis

There are 765 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/09/2019 18:01:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,581
CDSs (total)::4,510
Genes (coding)::4,351
CDSs (with protein)::4,351
Genes (RNA)::71
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::66
ncRNAs::2
Pseudo Genes (total)::159
CDSs (without protein)::159
Pseudo Genes (ambiguous residues)::0 of 159
Pseudo Genes (frameshifted)::69 of 159
Pseudo Genes (incomplete)::73 of 159
Pseudo Genes (internal stop)::42 of 159
Pseudo Genes (multiple problems)::24 of 159
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,200,543
Total ungapped length5,200,543
Number of contigs43
Contig N50339,777
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)43

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,200,543435,200,543339,77700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides uniformisBacteroides uniformis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016117815.1Bacteroides uniformissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016117815.1Bacteroides uniformissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3970.6777.72
Best-match type98.3970.6777.72

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna