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Source database (GenBank or RefSeq) File type

ASM902022v1

Organism name:: Bacteroides uniformis (CFB group bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: BIOML-A32
BioSample:: SAMN11944063
BioProject:: PRJNA544527
Submitter:: Massachusetts Institute of Technology
Date:: 2019/10/13
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_009020225.1 (latest)
RefSeq assembly accession:: GCF_009020225.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: WCUL01
Assembly method:: SPAdes v. 3.9.1
Expected final version:: yes
Genome coverage:: 95.796x
Sequencing technology:: Illumina NextSeq

IDs: 4884321 [UID] 14462418 [GenBank] 14570378 [RefSeq]

See Genome Information for Bacteroides uniformis

Pathogen Detection Resources

There are 765 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009020225.1	=	GCF_009020225.1	ASM902022v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/09/2019 17:35:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,459
CDSs (total)::4,399
Genes (coding)::4,276
CDSs (with protein)::4,276
Genes (RNA)::60
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::55
ncRNAs::2
Pseudo Genes (total)::123
CDSs (without protein)::123
Pseudo Genes (ambiguous residues)::0 of 123
Pseudo Genes (frameshifted)::49 of 123
Pseudo Genes (incomplete)::75 of 123
Pseudo Genes (internal stop)::22 of 123
Pseudo Genes (multiple problems)::20 of 123
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,023,263
Total ungapped length	5,023,252
Gaps between scaffolds	0
Number of scaffolds	101
Scaffold N50	271,127
Scaffold L50	6
Number of contigs	102
Contig N50	243,580
Contig L50	7
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	101

	ANI	Query coverage	Subject coverage
Declared type	99.78	84.67	90.16
Best-match type	99.78	84.67	90.16

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ASM902022v1

See Genome Information for Bacteroides uniformis

Pathogen Detection Resources

There are 765 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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