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ASM902040v1

Organism name:
Bacteroides uniformis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A23
BioSample:
SAMN11944054
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_009020405.1 (latest)
RefSeq assembly accession:
GCF_009020405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WCUC01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
51.515x
Sequencing technology:
Illumina NextSeq

IDs: 4884421 [UID] 14462598 [GenBank] 14571898 [RefSeq]

See Genome Information for Bacteroides uniformis

There are 765 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/09/2019 17:30:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,371
CDSs (total)::4,310
Genes (coding)::4,155
CDSs (with protein)::4,155
Genes (RNA)::61
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::56
ncRNAs::2
Pseudo Genes (total)::155
CDSs (without protein)::155
Pseudo Genes (ambiguous residues)::0 of 155
Pseudo Genes (frameshifted)::67 of 155
Pseudo Genes (incomplete)::78 of 155
Pseudo Genes (internal stop)::42 of 155
Pseudo Genes (multiple problems)::25 of 155
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,001,607
Total ungapped length5,001,607
Number of contigs85
Contig N50197,147
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)85

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,001,607855,001,607197,14700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides uniformisBacteroides uniformis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154205.1Bacteroides uniformis ATCC 8492suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154205.1Bacteroides uniformissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.2371.9576.30
Best-match type98.2371.9576.30

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna