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ASM902088v1

Organism name:
Bacteroides thetaiotaomicron (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A194
BioSample:
SAMN11944029
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_009020885.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WCTE01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
44.846x
Sequencing technology:
Illumina NextSeq

IDs: 4884661 [UID] 14463078 [GenBank]

See Genome Information for Bacteroides thetaiotaomicron

There are 1125 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/09/2019 13:53:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,189
CDSs (total)::6,111
Genes (coding)::5,868
CDSs (with protein)::5,868
Genes (RNA)::78
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::243
CDSs (without protein)::243
Pseudo Genes (ambiguous residues)::2 of 243
Pseudo Genes (frameshifted)::85 of 243
Pseudo Genes (incomplete)::138 of 243
Pseudo Genes (internal stop)::60 of 243
Pseudo Genes (multiple problems)::34 of 243
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,132,104
Total ungapped length7,131,906
Gaps between scaffolds0
Number of scaffolds166
Scaffold N50107,617
Scaffold L5019
Number of contigs169
Contig N50105,223
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)166

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,132,1041667,131,906107,61730

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides thetaiotaomicronBacteroides thetaiotaomicron

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000011065.1Bacteroides thetaiotaomicron VPI-5482type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000011065.1Bacteroides thetaiotaomicrontype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9276.0186.14
Best-match type98.9276.0186.14

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna