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Source database (GenBank or RefSeq) File type

ASM902123v1

Organism name:

Bacteroides thetaiotaomicron (CFB group bacteria)

Taxonomy check:

Infraspecific name:

Strain: BIOML-A177

BioSample:

SAMN11944012

BioProject:

PRJNA544527

Submitter:

Massachusetts Institute of Technology

Date:

2019/10/13

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

fragmented assembly
from large multi-isolate project
genome length too small

GenBank assembly accession:

GCA_009021235.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

WCSN01

Assembly method:

SPAdes v. 3.9.1

Expected final version:

yes

Genome coverage:

34.569x

Sequencing technology:

Illumina NextSeq

IDs: 4884861 [UID] 14463488 [GenBank]

See Genome Information for Bacteroides thetaiotaomicron

Pathogen Detection Resources

There are 1125 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009021235.1	n/a	n/a	ASM902123v1	Scaffold	Latest GenBank

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/09/2019 12:38:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,579
CDSs (total)::5,528
Genes (coding)::5,140
CDSs (with protein)::5,140
Genes (RNA)::51
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::3 (5S)
tRNAs::42
ncRNAs::2
Pseudo Genes (total)::388
CDSs (without protein)::388
Pseudo Genes (ambiguous residues)::87 of 388
Pseudo Genes (frameshifted)::208 of 388
Pseudo Genes (incomplete)::95 of 388
Pseudo Genes (internal stop)::93 of 388
Pseudo Genes (multiple problems)::85 of 388
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,681,091
Total ungapped length	4,673,921
Gaps between scaffolds	0
Number of scaffolds	2,040
Scaffold N50	2,506
Scaffold L50	538
Number of contigs	2,161
Contig N50	2,420
Contig L50	560
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	2,040

	ANI	Query coverage	Subject coverage
Declared type	98.87	76.47	56.80
Best-match type	98.87	76.47	56.80

Assembly

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Download Assembly

ASM902123v1

See Genome Information for Bacteroides thetaiotaomicron

Pathogen Detection Resources

There are 1125 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result