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ASM902160v1

Organism name:
Bacteroides thetaiotaomicron (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A159
BioSample:
SAMN11943993
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_009021605.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WCRV01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
139.136x
Sequencing technology:
Illumina NextSeq

IDs: 4885021 [UID] 14463798 [GenBank]

See Genome Information for Bacteroides thetaiotaomicron

There are 1125 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/09/2019 12:32:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,825
CDSs (total)::4,755
Genes (coding)::4,651
CDSs (with protein)::4,651
Genes (RNA)::70
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::65
ncRNAs::2
Pseudo Genes (total)::104
CDSs (without protein)::104
Pseudo Genes (ambiguous residues)::0 of 104
Pseudo Genes (frameshifted)::37 of 104
Pseudo Genes (incomplete)::56 of 104
Pseudo Genes (internal stop)::31 of 104
Pseudo Genes (multiple problems)::17 of 104
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,186,925
Total ungapped length6,183,047
Gaps between scaffolds0
Number of scaffolds46
Scaffold N50330,934
Scaffold L506
Number of contigs69
Contig N50202,102
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)46

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,186,925466,183,047330,934230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides thetaiotaomicronBacteroides thetaiotaomicron

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000011065.1Bacteroides thetaiotaomicron VPI-5482type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000011065.1Bacteroides thetaiotaomicrontype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.2078.6177.23
Best-match type98.2078.6177.23

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna