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ASM902169v1

Organism name:
Bacteroides thetaiotaomicron (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A153
BioSample:
SAMN11943987
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_009021695.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WCRP01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
123.48x
Sequencing technology:
Illumina NextSeq

IDs: 4885061 [UID] 14463888 [GenBank]

See Genome Information for Bacteroides thetaiotaomicron

There are 1125 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/09/2019 11:33:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,249
CDSs (total)::5,175
Genes (coding)::5,056
CDSs (with protein)::5,056
Genes (RNA)::74
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::67
ncRNAs::2
Pseudo Genes (total)::119
CDSs (without protein)::119
Pseudo Genes (ambiguous residues)::0 of 119
Pseudo Genes (frameshifted)::36 of 119
Pseudo Genes (incomplete)::69 of 119
Pseudo Genes (internal stop)::37 of 119
Pseudo Genes (multiple problems)::20 of 119
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,452,791
Total ungapped length6,452,791
Number of contigs77
Contig N50222,157
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)77

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,452,791776,452,791222,15700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides thetaiotaomicronBacteroides thetaiotaomicron

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000011065.1Bacteroides thetaiotaomicron VPI-5482type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000011065.1Bacteroides thetaiotaomicrontype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1382.7684.85
Best-match type99.1382.7684.85

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna