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Source database (GenBank or RefSeq) File type

ASM902219v1

Organism name:

Bacteroides thetaiotaomicron (CFB group bacteria)

Taxonomy check:

Infraspecific name:

Strain: BIOML-A129

BioSample:

SAMN11943963

BioProject:

PRJNA544527

Submitter:

Massachusetts Institute of Technology

Date:

2019/10/13

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

from large multi-isolate project

GenBank assembly accession:

GCA_009022195.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

WCQR01

Assembly method:

SPAdes v. 3.9.1

Expected final version:

yes

Genome coverage:

84.383x

Sequencing technology:

Illumina NextSeq

IDs: 4885311 [UID] 14464378 [GenBank]

See Genome Information for Bacteroides thetaiotaomicron

Pathogen Detection Resources

There are 1125 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009022195.1	n/a	n/a	ASM902219v1	Scaffold	Latest GenBank

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/09/2019 07:39:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,261
CDSs (total)::5,182
Genes (coding)::5,050
CDSs (with protein)::5,050
Genes (RNA)::79
rRNAs::5, 2 (5S, 23S)
complete rRNAs::3, 1 (5S, 23S)
partial rRNAs::2, 1 (5S, 23S)
tRNAs::70
ncRNAs::2
Pseudo Genes (total)::132
CDSs (without protein)::132
Pseudo Genes (ambiguous residues)::0 of 132
Pseudo Genes (frameshifted)::35 of 132
Pseudo Genes (incomplete)::84 of 132
Pseudo Genes (internal stop)::36 of 132
Pseudo Genes (multiple problems)::20 of 132
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	6,457,560
Total ungapped length	6,457,312
Gaps between scaffolds	0
Number of scaffolds	81
Scaffold N50	209,235
Scaffold L50	11
Number of contigs	85
Contig N50	209,235
Contig L50	12
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	81

	ANI	Query coverage	Subject coverage
Declared type	99.13	82.72	84.87
Best-match type	99.13	82.72	84.87

Assembly

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ASM902219v1

See Genome Information for Bacteroides thetaiotaomicron

Pathogen Detection Resources

There are 1125 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result