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Source database (GenBank or RefSeq) File type

ASM902247v1

Organism name:

Bacteroides thetaiotaomicron (CFB group bacteria)

Taxonomy check:

Infraspecific name:

Strain: BIOML-A115

BioSample:

SAMN11943949

BioProject:

PRJNA544527

Submitter:

Massachusetts Institute of Technology

Date:

2019/10/13

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

from large multi-isolate project

GenBank assembly accession:

GCA_009022475.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

WCQD01

Assembly method:

SPAdes v. 3.9.1

Expected final version:

yes

Genome coverage:

151.046x

Sequencing technology:

Illumina NextSeq

IDs: 4885451 [UID] 14464658 [GenBank]

See Genome Information for Bacteroides thetaiotaomicron

Pathogen Detection Resources

There are 1125 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009022475.1	n/a	n/a	ASM902247v1	Scaffold	Latest GenBank

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/09/2019 07:33:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,293
CDSs (total)::5,215
Genes (coding)::5,073
CDSs (with protein)::5,073
Genes (RNA)::78
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (5S)
tRNAs::70
ncRNAs::2
Pseudo Genes (total)::142
CDSs (without protein)::142
Pseudo Genes (ambiguous residues)::1 of 142
Pseudo Genes (frameshifted)::35 of 142
Pseudo Genes (incomplete)::91 of 142
Pseudo Genes (internal stop)::38 of 142
Pseudo Genes (multiple problems)::20 of 142
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	6,439,108
Total ungapped length	6,438,200
Gaps between scaffolds	0
Number of scaffolds	138
Scaffold N50	139,534
Scaffold L50	14
Number of contigs	153
Contig N50	139,534
Contig L50	15
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	138

	ANI	Query coverage	Subject coverage
Declared type	99.13	82.89	84.80
Best-match type	99.13	82.89	84.80

Assembly

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ASM902247v1

See Genome Information for Bacteroides thetaiotaomicron

Pathogen Detection Resources

There are 1125 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result