U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM902408v1

Organism name:
Bacteroides thetaiotaomicron (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A33
BioSample:
SAMN11943867
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_009024085.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WCNA01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
147.104x
Sequencing technology:
Illumina NextSeq

IDs: 4886251 [UID] 14466258 [GenBank]

See Genome Information for Bacteroides thetaiotaomicron

There are 1125 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/08/2019 20:57:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,112
CDSs (total)::5,042
Genes (coding)::4,921
CDSs (with protein)::4,921
Genes (RNA)::70
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::63
ncRNAs::2
Pseudo Genes (total)::121
CDSs (without protein)::121
Pseudo Genes (ambiguous residues)::0 of 121
Pseudo Genes (frameshifted)::36 of 121
Pseudo Genes (incomplete)::72 of 121
Pseudo Genes (internal stop)::36 of 121
Pseudo Genes (multiple problems)::20 of 121
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,339,674
Total ungapped length6,339,632
Gaps between scaffolds0
Number of scaffolds77
Scaffold N50204,398
Scaffold L5011
Number of contigs78
Contig N50192,053
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)77

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,339,674776,339,632204,39810

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides thetaiotaomicronBacteroides thetaiotaomicron

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000011065.1Bacteroides thetaiotaomicron VPI-5482type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000011065.1Bacteroides thetaiotaomicrontype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1384.2284.84
Best-match type99.1384.2284.84

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna