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ASM902478v1

Organism name:
Bacteroides stercoris (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A21
BioSample:
SAMN11943833
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_009024785.1 (latest)
RefSeq assembly accession:
GCF_009024785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WCLT01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
32.638x
Sequencing technology:
Illumina NextSeq

IDs: 4886631 [UID] 14467018 [GenBank] 14631228 [RefSeq]

See Genome Information for Bacteroides stercoris

There are 202 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/08/2019 16:16:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,973
CDSs (total)::3,918
Genes (coding)::3,732
CDSs (with protein)::3,732
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::186
CDSs (without protein)::186
Pseudo Genes (ambiguous residues)::36 of 186
Pseudo Genes (frameshifted)::81 of 186
Pseudo Genes (incomplete)::82 of 186
Pseudo Genes (internal stop)::28 of 186
Pseudo Genes (multiple problems)::37 of 186
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,235,389
Total ungapped length4,232,285
Gaps between scaffolds0
Number of scaffolds424
Scaffold N5015,793
Scaffold L5077
Number of contigs474
Contig N5014,557
Contig L5086
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)424

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,235,3894244,232,28515,793500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides stercorisBacteroides stercoris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154525.1Bacteroides stercoris ATCC 43183suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154525.1Bacteroides stercorissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.8467.9571.73
Best-match type97.8467.9571.73

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna