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ASM902489v1

Organism name:
Bacteroides stercoris (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A15
BioSample:
SAMN11943827
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_009024895.1 (latest)
RefSeq assembly accession:
GCF_009024895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WCLN01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
72.911x
Sequencing technology:
Illumina NextSeq

IDs: 4886671 [UID] 14467078 [GenBank] 14631208 [RefSeq]

See Genome Information for Bacteroides stercoris

There are 202 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/08/2019 16:06:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,611
CDSs (total)::3,553
Genes (coding)::3,399
CDSs (with protein)::3,399
Genes (RNA)::58
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::53
ncRNAs::2
Pseudo Genes (total)::154
CDSs (without protein)::154
Pseudo Genes (ambiguous residues)::1 of 154
Pseudo Genes (frameshifted)::49 of 154
Pseudo Genes (incomplete)::108 of 154
Pseudo Genes (internal stop)::30 of 154
Pseudo Genes (multiple problems)::29 of 154
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,084,909
Total ungapped length4,084,259
Gaps between scaffolds0
Number of scaffolds103
Scaffold N5086,521
Scaffold L5014
Number of contigs110
Contig N5086,521
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)103

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,084,9091034,084,25986,52170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides stercorisBacteroides stercoris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154525.1Bacteroides stercoris ATCC 43183suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154525.1Bacteroides stercorissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7473.4874.86
Best-match type98.7473.4874.86

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna