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ASM902513v1

Organism name:
Bacteroides stercoris (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A3
BioSample:
SAMN11943815
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_009025135.1 (latest)
RefSeq assembly accession:
GCF_009025135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WCLB01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
114.435x
Sequencing technology:
Illumina NextSeq

IDs: 4886781 [UID] 14467318 [GenBank] 14632128 [RefSeq]

See Genome Information for Bacteroides stercoris

There are 202 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/08/2019 15:59:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,690
CDSs (total)::3,622
Genes (coding)::3,478
CDSs (with protein)::3,478
Genes (RNA)::68
rRNAs::3, 1, 3 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::144
CDSs (without protein)::144
Pseudo Genes (ambiguous residues)::0 of 144
Pseudo Genes (frameshifted)::65 of 144
Pseudo Genes (incomplete)::76 of 144
Pseudo Genes (internal stop)::33 of 144
Pseudo Genes (multiple problems)::27 of 144
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,193,667
Total ungapped length4,193,667
Number of contigs99
Contig N5087,355
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)99

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,193,667994,193,66787,35500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides stercorisBacteroides stercoris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154525.1Bacteroides stercoris ATCC 43183suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154525.1Bacteroides stercorissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1872.0575.37
Best-match type98.1872.0575.37

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna