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ASM902561v1

Organism name:
Bacteroides salyersiae (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A37
BioSample:
SAMN11943811
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_009025615.1 (latest)
RefSeq assembly accession:
GCF_009025615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WCKX01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
40.036x
Sequencing technology:
Illumina NextSeq

IDs: 4887021 [UID] 14467838 [GenBank] 14631608 [RefSeq]

See Genome Information for Bacteroides salyersiae

There are 87 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/08/2019 16:44:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,230
CDSs (total)::4,170
Genes (coding)::4,068
CDSs (with protein)::4,068
Genes (RNA)::60
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::55
ncRNAs::2
Pseudo Genes (total)::102
CDSs (without protein)::102
Pseudo Genes (ambiguous residues)::0 of 102
Pseudo Genes (frameshifted)::50 of 102
Pseudo Genes (incomplete)::52 of 102
Pseudo Genes (internal stop)::29 of 102
Pseudo Genes (multiple problems)::25 of 102
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,393,917
Total ungapped length5,393,917
Number of contigs104
Contig N50130,620
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)104

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,393,9171045,393,917130,62000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides salyersiaeBacteroides salyersiae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000381365.1Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000381365.1Bacteroides salyersiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1687.7289.10
Best-match type99.1687.7289.10

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna