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Source database (GenBank or RefSeq) File type

ASM902581v1

Organism name:: Bacteroides salyersiae (CFB group bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: BIOML-A31
BioSample:: SAMN11943805
BioProject:: PRJNA544527
Submitter:: Massachusetts Institute of Technology
Date:: 2019/10/13
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_009025815.1 (latest)
RefSeq assembly accession:: GCF_009025815.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: WCKR01
Assembly method:: SPAdes v. 3.9.1
Expected final version:: yes
Genome coverage:: 32.2x
Sequencing technology:: Illumina NextSeq

IDs: 4887121 [UID] 14468078 [GenBank] 14631628 [RefSeq]

See Genome Information for Bacteroides salyersiae

Pathogen Detection Resources

There are 87 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009025815.1	=	GCF_009025815.1	ASM902581v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/08/2019 16:44:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,327
CDSs (total)::4,266
Genes (coding)::4,161
CDSs (with protein)::4,161
Genes (RNA)::61
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::56
ncRNAs::2
Pseudo Genes (total)::105
CDSs (without protein)::105
Pseudo Genes (ambiguous residues)::0 of 105
Pseudo Genes (frameshifted)::46 of 105
Pseudo Genes (incomplete)::53 of 105
Pseudo Genes (internal stop)::31 of 105
Pseudo Genes (multiple problems)::21 of 105
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,493,458
Total ungapped length	5,493,445
Gaps between scaffolds	0
Number of scaffolds	54
Scaffold N50	219,884
Scaffold L50	8
Number of contigs	55
Contig N50	212,426
Contig L50	8
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	54

	ANI	Query coverage	Subject coverage
Declared type	99.11	85.03	87.97
Best-match type	99.11	85.03	87.97

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ASM902581v1

See Genome Information for Bacteroides salyersiae

Pathogen Detection Resources

There are 87 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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