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ASM902583v1

Organism name:
Bacteroides salyersiae (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A28
BioSample:
SAMN11943802
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_009025835.1 (latest)
RefSeq assembly accession:
GCF_009025835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WCKO01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
103.748x
Sequencing technology:
Illumina NextSeq

IDs: 4887151 [UID] 14468138 [GenBank] 14631688 [RefSeq]

See Genome Information for Bacteroides salyersiae

There are 87 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/08/2019 16:51:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,719
CDSs (total)::4,646
Genes (coding)::4,527
CDSs (with protein)::4,527
Genes (RNA)::73
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::68
ncRNAs::2
Pseudo Genes (total)::119
CDSs (without protein)::119
Pseudo Genes (ambiguous residues)::0 of 119
Pseudo Genes (frameshifted)::56 of 119
Pseudo Genes (incomplete)::62 of 119
Pseudo Genes (internal stop)::32 of 119
Pseudo Genes (multiple problems)::27 of 119
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,841,243
Total ungapped length5,841,243
Number of contigs34
Contig N50292,918
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,841,243345,841,243292,91800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides salyersiaeBacteroides salyersiae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000381365.1Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000381365.1Bacteroides salyersiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1981.3789.51
Best-match type99.1981.3789.51

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna