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ASM907715v1

Organism name:
Bifidobacterium adolescentis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A172
BioSample:
SAMN11944511
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_009077155.1 (latest)
RefSeq assembly accession:
GCF_009077155.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WDLB01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
177.186x
Sequencing technology:
Illumina NextSeq

IDs: 4892371 [UID] 14521898 [GenBank] 14633908 [RefSeq]

See Genome Information for Bifidobacterium adolescentis

There are 715 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/11/2019 05:39:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,808
CDSs (total)::1,743
Genes (coding)::1,699
CDSs (with protein)::1,699
Genes (RNA)::65
rRNAs::3, 1, 3 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (23S)
tRNAs::55
ncRNAs::3
Pseudo Genes (total)::44
CDSs (without protein)::44
Pseudo Genes (ambiguous residues)::0 of 44
Pseudo Genes (frameshifted)::12 of 44
Pseudo Genes (incomplete)::33 of 44
Pseudo Genes (internal stop)::6 of 44
Pseudo Genes (multiple problems)::6 of 44
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,157,269
Total ungapped length2,157,164
Gaps between scaffolds0
Number of scaffolds14
Scaffold N501,179,130
Scaffold L501
Number of contigs15
Contig N501,179,130
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)14

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,157,269142,157,1641,179,13010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium adolescentisBifidobacterium adolescentis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000010425.1Bifidobacterium adolescentis ATCC 15703type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000010425.1Bifidobacterium adolescentistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.0682.1884.84
Best-match type98.0682.1884.84

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna