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ASM907825v1

Organism name:
Bifidobacterium adolescentis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A189
BioSample:
SAMN11944528
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_009078255.1 (latest)
RefSeq assembly accession:
GCF_009078255.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WDLS01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
220.078x
Sequencing technology:
Illumina NextSeq

IDs: 4892931 [UID] 14523018 [GenBank] 14636368 [RefSeq]

See Genome Information for Bifidobacterium adolescentis

Pathogen Detection Resources

There are 715 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/11/2019 06:51:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,088
CDSs (total)::2,015
Genes (coding)::1,954
CDSs (with protein)::1,954
Genes (RNA)::73
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::66
ncRNAs::3
Pseudo Genes (total)::61
CDSs (without protein)::61
Pseudo Genes (ambiguous residues)::1 of 61
Pseudo Genes (frameshifted)::25 of 61
Pseudo Genes (incomplete)::39 of 61
Pseudo Genes (internal stop)::15 of 61
Pseudo Genes (multiple problems)::15 of 61
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,388,688
Total ungapped length2,388,677
Gaps between scaffolds0
Number of scaffolds35
Scaffold N50181,766
Scaffold L504
Number of contigs36
Contig N50181,766
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)35

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,388,688352,388,677181,76610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium adolescentisBifidobacterium adolescentis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000010425.1Bifidobacterium adolescentis ATCC 15703type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000010425.1Bifidobacterium adolescentistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1073.7984.35
Best-match type98.1073.7984.35

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna