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Source database (GenBank or RefSeq) File type

ASM909372v1

Organism name:

Bifidobacterium adolescentis (high G+C Gram-positive bacteria)

Taxonomy check:

Infraspecific name:

Strain: BIOML-A133

BioSample:

SAMN11944472

BioProject:

PRJNA544527

Submitter:

Massachusetts Institute of Technology

Date:

2019/10/15

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

from large multi-isolate project

GenBank assembly accession:

GCA_009093725.1 (latest)

RefSeq assembly accession:

GCF_009093725.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

WDJP01

Assembly method:

SPAdes v. 3.9.1

Expected final version:

yes

Genome coverage:

152.773x

Sequencing technology:

Illumina NextSeq

IDs: 4893871 [UID] 14538538 [GenBank] 14637028 [RefSeq]

See Genome Information for Bifidobacterium adolescentis

Pathogen Detection Resources

There are 715 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009093725.1	=	GCF_009093725.1	ASM909372v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/11/2019 03:57:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,005
CDSs (total)::1,936
Genes (coding)::1,865
CDSs (with protein)::1,865
Genes (RNA)::69
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::62
ncRNAs::3
Pseudo Genes (total)::71
CDSs (without protein)::71
Pseudo Genes (ambiguous residues)::0 of 71
Pseudo Genes (frameshifted)::34 of 71
Pseudo Genes (incomplete)::43 of 71
Pseudo Genes (internal stop)::15 of 71
Pseudo Genes (multiple problems)::15 of 71
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,291,921
Total ungapped length	2,291,783
Gaps between scaffolds	0
Number of scaffolds	26
Scaffold N50	327,419
Scaffold L50	2
Number of contigs	27
Contig N50	327,419
Contig L50	2
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	26

	ANI	Query coverage	Subject coverage
Declared type	98.09	78.00	85.55
Best-match type	98.09	78.00	85.55

Assembly

Genome Assembly

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Download Assembly

ASM909372v1

See Genome Information for Bifidobacterium adolescentis

Pathogen Detection Resources

There are 715 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result