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ASM910170v1

Organism name:
Bacteroides xylanisolvens (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A36
BioSample:
SAMN11944300
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_009101705.1 (latest)
RefSeq assembly accession:
GCF_009101705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WDDI01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
49.357x
Sequencing technology:
Illumina NextSeq

IDs: 4908211 [UID] 14547078 [GenBank] 14638248 [RefSeq]

See Genome Information for Bacteroides xylanisolvens

There are 287 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/10/2019 20:38:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,592
CDSs (total)::5,534
Genes (coding)::5,363
CDSs (with protein)::5,363
Genes (RNA)::58
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::53
ncRNAs::2
Pseudo Genes (total)::171
CDSs (without protein)::171
Pseudo Genes (ambiguous residues)::0 of 171
Pseudo Genes (frameshifted)::60 of 171
Pseudo Genes (incomplete)::83 of 171
Pseudo Genes (internal stop)::48 of 171
Pseudo Genes (multiple problems)::17 of 171
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,111,170
Total ungapped length6,111,170
Number of contigs965
Contig N5012,325
Contig L50105
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)965

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,111,1709656,111,17012,32500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides xylanisolvensBacteroides xylanisolvens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000210075.1Bacteroides xylanisolvens XB1Asuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210075.1Bacteroides xylanisolvenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.0374.7578.75
Best-match type98.0374.7578.75

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna