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Source database (GenBank or RefSeq) File type

ASM910192v1

Organism name:

Phocaeicola vulgatus (CFB group bacteria)

Taxonomy check:

Infraspecific name:

Strain: BIOML-A117

BioSample:

SAMN11944240

BioProject:

PRJNA544527

Submitter:

Massachusetts Institute of Technology

Date:

2019/10/15

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

from large multi-isolate project

GenBank assembly accession:

GCA_009101925.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

WDBD01

Assembly method:

SPAdes v. 3.9.1

Expected final version:

yes

Genome coverage:

124.38x

Sequencing technology:

Illumina NextSeq

IDs: 4914301 [UID] 14547358 [GenBank]

See Genome Information for Phocaeicola vulgatus

Pathogen Detection Resources

There are 1480 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009101925.1	n/a	n/a	ASM910192v1	Scaffold	Latest GenBank

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/10/2019 12:44:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,706
CDSs (total)::4,644
Genes (coding)::4,426
CDSs (with protein)::4,426
Genes (RNA)::62
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::56
ncRNAs::2
Pseudo Genes (total)::218
CDSs (without protein)::218
Pseudo Genes (ambiguous residues)::0 of 218
Pseudo Genes (frameshifted)::119 of 218
Pseudo Genes (incomplete)::106 of 218
Pseudo Genes (internal stop)::56 of 218
Pseudo Genes (multiple problems)::52 of 218
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,344,262
Total ungapped length	5,344,251
Gaps between scaffolds	0
Number of scaffolds	117
Scaffold N50	90,192
Scaffold L50	19
Number of contigs	118
Contig N50	90,192
Contig L50	19
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	117

	ANI	Query coverage	Subject coverage
Declared type	99.36	75.61	78.26
Best-match type	99.36	75.61	78.26

Assembly

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Download Assembly

ASM910192v1

See Genome Information for Phocaeicola vulgatus

Pathogen Detection Resources

There are 1480 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result