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ASM910282v1

Organism name:
Bacteroides xylanisolvens (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIOML-A4
BioSample:
SAMN11944268
BioProject:
PRJNA544527
Submitter:
Massachusetts Institute of Technology
Date:
2019/10/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_009102825.1 (latest)
RefSeq assembly accession:
GCF_009102825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WDCD01
Assembly method:
SPAdes v. 3.9.1
Expected final version:
yes
Genome coverage:
66.499x
Sequencing technology:
Illumina NextSeq

IDs: 4924961 [UID] 14548438 [GenBank] 14638968 [RefSeq]

See Genome Information for Bacteroides xylanisolvens

There are 287 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/10/2019 14:11:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,224
CDSs (total)::5,159
Genes (coding)::5,008
CDSs (with protein)::5,008
Genes (RNA)::65
rRNAs::2, 2, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::57
ncRNAs::3
Pseudo Genes (total)::151
CDSs (without protein)::151
Pseudo Genes (ambiguous residues)::0 of 151
Pseudo Genes (frameshifted)::78 of 151
Pseudo Genes (incomplete)::68 of 151
Pseudo Genes (internal stop)::42 of 151
Pseudo Genes (multiple problems)::33 of 151
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,392,133
Total ungapped length6,391,950
Gaps between scaffolds0
Number of scaffolds91
Scaffold N50134,749
Scaffold L5015
Number of contigs93
Contig N50134,749
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)91

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,392,133916,391,950134,74920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides xylanisolvensBacteroides xylanisolvens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000210075.1Bacteroides xylanisolvens XB1Asuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210075.1Bacteroides xylanisolvenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9975.7383.46
Best-match type97.9975.7383.46

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna