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Source database (GenBank or RefSeq) File type

ASM910300v1

Organism name:

Phocaeicola vulgatus (CFB group bacteria)

Taxonomy check:

Infraspecific name:

Strain: BIOML-A133

BioSample:

SAMN11944256

BioProject:

PRJNA544527

Submitter:

Massachusetts Institute of Technology

Date:

2019/10/15

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

from large multi-isolate project

GenBank assembly accession:

GCA_009103005.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

WDBT01

Assembly method:

SPAdes v. 3.9.1

Expected final version:

yes

Genome coverage:

17.262x

Sequencing technology:

Illumina NextSeq

IDs: 4925481 [UID] 14548648 [GenBank]

See Genome Information for Phocaeicola vulgatus

Pathogen Detection Resources

There are 1480 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009103005.1	n/a	n/a	ASM910300v1	Scaffold	Latest GenBank

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/10/2019 13:20:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,830
CDSs (total)::4,767
Genes (coding)::4,506
CDSs (with protein)::4,506
Genes (RNA)::63
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::57
ncRNAs::2
Pseudo Genes (total)::261
CDSs (without protein)::261
Pseudo Genes (ambiguous residues)::42 of 261
Pseudo Genes (frameshifted)::154 of 261
Pseudo Genes (incomplete)::90 of 261
Pseudo Genes (internal stop)::65 of 261
Pseudo Genes (multiple problems)::77 of 261
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,404,364
Total ungapped length	5,402,568
Gaps between scaffolds	0
Number of scaffolds	190
Scaffold N50	59,569
Scaffold L50	29
Number of contigs	241
Contig N50	53,998
Contig L50	34
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	190

	ANI	Query coverage	Subject coverage
Declared type	99.32	74.70	78.19
Best-match type	99.32	74.70	78.19

Assembly

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Download Assembly

ASM910300v1

See Genome Information for Phocaeicola vulgatus

Pathogen Detection Resources

There are 1480 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result