Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM910778v1

Organism name:

Phocaeicola vulgatus (CFB group bacteria)

Taxonomy check:

Infraspecific name:

Strain: BIOML-A107

BioSample:

SAMN11944230

BioProject:

PRJNA544527

Submitter:

Massachusetts Institute of Technology

Date:

2019/10/15

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

from large multi-isolate project

GenBank assembly accession:

GCA_009107785.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

WDAU01

Assembly method:

SPAdes v. 3.9.1

Expected final version:

yes

Genome coverage:

208.533x

Sequencing technology:

Illumina NextSeq

IDs: 4927871 [UID] 14553518 [GenBank]

See Genome Information for Phocaeicola vulgatus

Pathogen Detection Resources

There are 1480 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009107785.1	n/a	n/a	ASM910778v1	Scaffold	Latest GenBank

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/10/2019 12:39:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,298
CDSs (total)::4,225
Genes (coding)::4,026
CDSs (with protein)::4,026
Genes (RNA)::73
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::67
ncRNAs::2
Pseudo Genes (total)::199
CDSs (without protein)::199
Pseudo Genes (ambiguous residues)::0 of 199
Pseudo Genes (frameshifted)::101 of 199
Pseudo Genes (incomplete)::98 of 199
Pseudo Genes (internal stop)::65 of 199
Pseudo Genes (multiple problems)::61 of 199
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,956,428
Total ungapped length	4,956,293
Gaps between scaffolds	0
Number of scaffolds	108
Scaffold N50	106,353
Scaffold L50	15
Number of contigs	110
Contig N50	102,333
Contig L50	15
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	108

	ANI	Query coverage	Subject coverage
Declared type	99.37	81.27	78.02
Best-match type	99.37	81.27	78.02

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM910778v1

See Genome Information for Phocaeicola vulgatus

Pathogen Detection Resources

There are 1480 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result