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ARS_UNL_BGru_maternal_1.0_p

Organism name:
Bos grunniens x Bos taurus (dzo)
Isolate:
Esperanza
Sex:
female
BioSample:
SAMN12153487
BioProject:
PRJNA551500
Submitter:
University of Nebraska - Lincoln
Date:
2019/11/04
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_009493645.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
VLPI01
Assembly method:
Canu v. 2019
Expected final version:
yes
Genome coverage:
60.0x
Sequencing technology:
PacBio Sequel; Illumina HiSeq
Linked assembly:
GCA_009493655.1 (alternate pseudohaplotype of diploid)

IDs: 5145971 [UID] 15018558 [GenBank]

See Genome Information for Bos grunniens x Bos taurus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

This is the phased maternal haploid genome of a Bos taurus x Bos grunniens hybrid. The paternal haploid genome is available in VLPJ00000000. This is a purely yak (Bos grunniens) genome, except for the small amount of cattle introgression ... present in all modern yaks. Sequence data from this individual's parents, SAMN12153486 and SAMN12153485, were used to phase this assembly.  more

Global statistics

Total sequence length2,677,172,352
Total ungapped length2,677,129,979
Gaps between scaffolds0
Number of scaffolds485
Scaffold N50104,384,344
Scaffold L5011
Number of contigs596
Contig N5072,336,424
Contig L5013
Total number of chromosomes and plasmids31
Number of component sequences (WGS or clone)485

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_009493675.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM018733.1n/an/a0
Chromosome 2CM018734.1n/an/a0
Chromosome 3CM018735.1n/an/a0
Chromosome 4CM018736.1n/an/a0
Chromosome 5CM018737.1n/an/a0
Chromosome 6CM018738.1n/an/a0
Chromosome 7CM018739.1n/an/a0
Chromosome 8CM018740.1n/an/a0
Chromosome 9CM018741.1n/an/a0
Chromosome 10CM018742.1n/an/a0
Chromosome 11CM018743.1n/an/a0
Chromosome 12CM018744.1n/an/a0
Chromosome 13CM018745.1n/an/a0
Chromosome 14CM018746.1n/an/a0
Chromosome 15CM018747.1n/an/a0
Chromosome 16CM018748.1n/an/a0
Chromosome 17CM018749.1n/an/a0
Chromosome 18CM018750.1n/an/a0
Chromosome 19CM018751.1n/an/a0
Chromosome 20CM018752.1n/an/a0
Chromosome 21CM018753.1n/an/a0
Chromosome 22CM018754.1n/an/a0
Chromosome 23CM018755.1n/an/a0
Chromosome 24CM018756.1n/an/a0
Chromosome 25CM018757.1n/an/a0
Chromosome 26CM018758.1n/an/a0
Chromosome 27CM018759.1n/an/a0
Chromosome 28CM018760.1n/an/a0
Chromosome 29CM018761.1n/an/a0
Chromosome XCM018762.1n/an/a0
unplacedn/an/an/a454

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,677,156,0124842,677,113,639104,384,3441110
Chromosome 1157,220,9851157,220,985157,220,98500
Chromosome 2136,143,9941136,143,994136,143,99400
Chromosome 3120,834,7571120,833,840120,834,75710
Chromosome 4121,265,2411121,265,241121,265,24100
Chromosome 5119,983,6611119,983,631119,983,66110
Chromosome 6117,377,1371117,377,112117,377,13710
Chromosome 7109,320,8241109,320,824109,320,82400
Chromosome 8113,042,3251113,042,325113,042,32500
Chromosome 9104,384,3441104,384,344104,384,34400
Chromosome 10100,995,0731100,994,133100,995,07310
Chromosome 11106,815,6421106,815,617106,815,64210
Chromosome 1286,645,977186,645,95286,645,97710
Chromosome 1382,843,968182,843,44382,843,96820
Chromosome 1482,066,426182,066,40182,066,42610
Chromosome 1583,147,837183,147,33783,147,83710
Chromosome 1680,768,485180,767,80580,768,48510
Chromosome 1773,139,512173,138,98773,139,51220
Chromosome 1865,377,466165,376,56365,377,46610
Chromosome 1964,515,606164,515,58164,515,60610
Chromosome 2071,777,222171,777,22271,777,22200
Chromosome 2169,794,949169,794,94969,794,94900
Chromosome 2260,754,780160,754,78060,754,78000
Chromosome 2351,231,545151,230,63151,231,54510
Chromosome 2462,383,764162,383,76462,383,76400
Chromosome 2542,220,576142,220,55142,220,57610
Chromosome 2651,586,326151,586,32651,586,32600
Chromosome 2745,547,728145,547,72845,547,72800
Chromosome 2845,918,268145,918,26845,918,26800
Chromosome 2951,203,746151,203,74651,203,74600
Chromosome X132,421,3971132,414,630132,421,397130
unplaced66,426,45145466,396,929334,558810
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,340116,34016,34000