Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

sPriPec2.1.pri

Organism name:

Pristis pectinata (smalltooth sawfish)

Isolate:

sPriPec2

Sex:

female

BioSample:

SAMN12629505

BioProject:

PRJNA562009

Submitter:

Vertebrate Genomes Project

Date:

2019/12/19

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_009764475.2 (latest)

RefSeq assembly accession:

GCF_009764475.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

WOXU01

Assembly method:

FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-11-18; VGP assembly pipeline individual v. 1.5

Expected final version:

Genome coverage:

61.91x

Sequencing technology:

PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_009764485.1 (alternate pseudohaplotype of diploid)

IDs: 9664021 [UID] 25858538 [GenBank] 37180478 [RefSeq]

See Genome Information for Pristis pectinata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009764475.2	≠	GCF_009764475.1	sPriPec2.1.pri	Chromosome	Latest GenBank, Latest RefSeq
GCA_009764475.1	n/a	n/a	sPriPec2.pri	Chromosome	Replaced GenBank

Comment

This assembly represents the principal haplotype of the diploid genome Pristis pectinata and includes the chromosomes. The alternate haplotype sequences are in WGS project WOXV00000000.
Chromosome 36 in assembly sPriPec2.pri was reidentified as chromosome X in assembly sPriPec2.1.pri in March 2021.

Global statistics

Total sequence length	2,267,840,987
Total ungapped length	2,247,278,111
Gaps between scaffolds	0
Number of scaffolds	172
Scaffold N50	101,699,621
Scaffold L50	10
Number of contigs	870
Contig N50	17,009,522
Contig L50	39
Total number of chromosomes and plasmids	46
Number of component sequences (WGS or clone)	172

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM019855.1	=	NC_067405.1	0
Chromosome 2	CM019856.1	=	NC_067406.1	0
Chromosome 3	CM019857.1	=	NC_067407.1	0
Chromosome 4	CM019858.1	=	NC_067408.1	0
Chromosome 5	CM019859.1	=	NC_067409.1	0
Chromosome 6	CM019860.1	=	NC_067410.1	0
Chromosome 7	CM019861.1	=	NC_067411.1	0
Chromosome 8	CM019862.1	=	NC_067412.1	0
Chromosome 9	CM019863.1	=	NC_067413.1	0
Chromosome 10	CM019864.1	=	NC_067414.1	0
Chromosome 11	CM019865.1	=	NC_067415.1	0
Chromosome 12	CM019866.1	=	NC_067416.1	0
Chromosome 13	CM019867.1	=	NC_067417.1	0
Chromosome 14	CM019868.1	=	NC_067418.1	0
Chromosome 15	CM019869.1	=	NC_067419.1	0
Chromosome 16	CM019870.1	=	NC_067420.1	0
Chromosome 17	CM019871.1	=	NC_067421.1	0
Chromosome 18	CM019872.1	=	NC_067422.1	0
Chromosome 19	CM019873.1	=	NC_067423.1	0
Chromosome 20	CM019874.1	=	NC_067424.1	0
Chromosome 21	CM019875.1	=	NC_067425.1	0
Chromosome 22	CM019876.1	=	NC_067426.1	0
Chromosome 23	CM019877.1	=	NC_067427.1	0
Chromosome 24	CM019878.1	=	NC_067428.1	0
Chromosome 25	CM019879.1	=	NC_067429.1	0
Chromosome 26	CM019880.1	=	NC_067430.1	0
Chromosome 27	CM019881.1	=	NC_067431.1	0
Chromosome 28	CM019882.1	=	NC_067432.1	0
Chromosome 29	CM019883.1	=	NC_067433.1	0
Chromosome 30	CM019884.1	=	NC_067434.1	0
Chromosome 31	CM019885.1	=	NC_067435.1	0
Chromosome 32	CM019886.1	=	NC_067436.1	0
Chromosome 33	CM019887.1	=	NC_067437.1	0
Chromosome 34	CM019888.1	=	NC_067438.1	0
Chromosome 35	CM019889.1	=	NC_067439.1	0
Chromosome 37	CM019891.1	=	NC_067440.1	0
Chromosome 38	CM019892.1	=	NC_067441.1	0
Chromosome 39	CM019893.1	=	NC_067442.1	0
Chromosome 40	CM019894.1	=	NC_067443.1	0
Chromosome 41	CM019895.1	=	NC_067444.1	0
Chromosome 42	CM019896.1	=	NC_067445.1	0
Chromosome 43	CM019897.1	=	NC_067446.1	0
Chromosome 44	CM019898.1	=	NC_067447.1	0
Chromosome 45	CM019899.1	=	NC_067448.1	0
Chromosome 46	CM019900.1	=	NC_067449.1	0
Chromosome X	CM019890.1	=	NC_067450.1	0
unplaced	n/a	n/a	n/a	126

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,267,840,987	172	2,247,278,111	101,699,621	698
Chromosome 1	149,968,914	1	149,434,565	149,968,914	22
Chromosome 2	145,556,842	1	145,409,839	145,556,842	17
Chromosome 3	144,684,616	1	144,139,486	144,684,616	21
Chromosome 4	120,465,868	1	120,351,858	120,465,868	10
Chromosome 5	116,561,020	1	116,403,144	116,561,020	12
Chromosome 6	115,668,120	1	115,252,592	115,668,120	16
Chromosome 7	104,354,160	1	104,074,904	104,354,160	15
Chromosome 8	103,001,046	1	102,729,012	103,001,046	12
Chromosome 9	102,490,209	1	102,242,158	102,490,209	8
Chromosome 10	101,699,621	1	101,319,253	101,699,621	14
Chromosome 11	88,408,542	1	88,252,208	88,408,542	13
Chromosome 12	57,793,762	1	55,749,056	57,793,762	34
Chromosome 13	53,952,022	1	53,794,006	53,952,022	15
Chromosome 14	53,698,128	1	53,125,034	53,698,128	26
Chromosome 15	50,858,502	1	50,765,384	50,858,502	7
Chromosome 16	46,354,275	1	45,904,825	46,354,275	10
Chromosome 17	45,060,308	1	44,399,566	45,060,308	21
Chromosome 18	44,725,268	1	43,029,107	44,725,268	20
Chromosome 19	44,168,680	1	44,145,016	44,168,680	8
Chromosome 20	42,963,292	1	42,712,500	42,963,292	17
Chromosome 21	39,010,861	1	38,754,233	39,010,861	11
Chromosome 22	38,352,228	1	38,064,830	38,352,228	7
Chromosome 23	36,456,661	1	36,417,450	36,456,661	8
Chromosome 24	35,742,751	1	35,327,574	35,742,751	9
Chromosome 25	33,830,644	1	33,829,144	33,830,644	10
Chromosome 26	32,947,653	1	32,899,732	32,947,653	3
Chromosome 27	31,931,137	1	31,930,737	31,931,137	4
Chromosome 28	31,336,126	1	31,198,221	31,336,126	5
Chromosome 29	28,341,390	1	27,852,446	28,341,390	36
Chromosome 30	27,530,392	1	26,286,090	27,530,392	8
Chromosome 31	22,482,795	1	22,312,652	22,482,795	6
Chromosome 32	21,749,021	1	21,596,216	21,749,021	9
Chromosome 33	20,193,044	1	20,192,331	20,193,044	6
Chromosome 34	19,913,265	1	19,522,066	19,913,265	30
Chromosome 35	19,564,846	1	19,159,410	19,564,846	22
Chromosome 37	14,606,458	1	14,566,665	14,606,458	13
Chromosome 38	13,611,680	1	12,129,312	13,611,680	21
Chromosome 39	10,237,845	1	7,514,006	10,237,845	29
Chromosome 40	9,426,723	1	9,116,118	9,426,723	21
Chromosome 41	5,270,553	1	4,453,272	5,270,553	10
Chromosome 42	4,200,876	1	4,003,989	4,200,876	12
Chromosome 43	3,864,382	1	3,497,716	3,864,382	9
Chromosome 44	3,835,809	1	3,698,164	3,835,809	5
Chromosome 45	3,175,387	1	2,803,589	3,175,387	9
Chromosome 46	2,723,055	1	2,515,067	2,723,055	13
Chromosome X	16,413,646	1	16,000,727	16,413,646	15
unplaced	8,658,564	126	8,402,841	97,597	49

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

sPriPec2.1.pri

See Genome Information for Pristis pectinata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics