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bTaeGut2.pri.v2

Organism name:
Taeniopygia guttata (zebra finch)
Isolate:
Blue55
Sex:
female
BioSample:
SAMN09946140
BioProject:
PRJNA489186
Submitter:
Vertebrate Genomes Project
Date:
2020/04/01
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_009859065.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
STFU02
Assembly method:
FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; scaff10x v. 2.1; Bionano Solve 2 enzyme v. 3.2.1; Salsa2 v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-11-12; VGP standard assembly pipeline v. 1.0
Expected final version:
no
Genome coverage:
101.2x
Sequencing technology:
PacBio Sequel I; 10X genome; Bionano Genomics; Arima Genomics Hi-C
Linked assembly:
GCA_009859025.1 (alternate pseudohaplotype of diploid)

IDs: 6491091 [UID] 18204948 [GenBank]

See Genome Information for Taeniopygia guttata

Pathogen Detection Resources

There are 15 assemblies for this organism

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History (Show revision history)

Comment

This assembly represents the principal haplotype of the diploid genome Taeniopygia guttata and includes the chromosomes. The alternate haplotype sequences are in WGS project STFT00000000.

Global statistics

Total sequence length1,106,297,559
Total ungapped length1,084,477,008
Gaps between scaffolds0
Number of scaffolds541
Scaffold N5071,643,432
Scaffold L506
Number of contigs1,321
Contig N504,023,669
Contig L5069
Total number of chromosomes and plasmids33
Number of component sequences (WGS or clone)541

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_009859095.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM020832.2n/an/a0
Chromosome 1ACM020833.1n/an/a0
Chromosome 2CM020834.2n/an/a0
Chromosome 3CM020835.2n/an/a0
Chromosome 4CM020836.1n/an/a0
Chromosome 4ACM020837.2n/an/a0
Chromosome 5CM020838.2n/an/a0
Chromosome 6CM020839.1n/an/a0
Chromosome 7CM020840.2n/an/a0
Chromosome 8CM020841.2n/an/a0
Chromosome 9CM020842.2n/an/a0
Chromosome 10CM020843.2n/an/a0
Chromosome 11CM020844.2n/an/a0
Chromosome 12CM020845.2n/an/a0
Chromosome 13CM020846.2n/an/a0
Chromosome 14CM020847.1n/an/a0
Chromosome 15CM020848.2n/an/a0
Chromosome 17CM020849.2n/an/a0
Chromosome 18CM020850.2n/an/a0
Chromosome 19CM020851.1n/an/a0
Chromosome 20CM020852.1n/an/a0
Chromosome 21n/an/an/a2
Chromosome 22n/an/an/a3
Chromosome 23CM020855.1n/an/a0
Chromosome 24CM020856.2n/an/a0
Chromosome 25CM020857.1n/an/a0
Chromosome 26CM020858.1n/an/a0
Chromosome 27CM020859.2n/an/a0
Chromosome 28n/an/an/a2
Chromosome ZCM020861.1n/an/a0
Chromosome WCM020862.1n/an/a0
Chromosome 29CM020863.1n/an/a0
unplacedn/an/an/a504

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,106,280,7035401,084,460,15271,643,4327800
Chromosome 1Assembled molecule116,135,6361115,166,445116,135,636530
Chromosome 1AAssembled molecule71,643,432170,474,95271,643,432250
Chromosome 2Assembled molecule151,567,5711150,561,608151,567,571580
Chromosome 3Assembled molecule112,217,3481111,046,783112,217,348300
Chromosome 4Assembled molecule73,512,665173,199,49573,512,665420
Chromosome 4AAssembled molecule19,938,956119,905,45219,938,95690
Chromosome 5Assembled molecule63,945,500163,599,03563,945,500370
Chromosome 6Assembled molecule37,408,232135,935,01537,408,232180
Chromosome 7Assembled molecule39,089,786138,871,14639,089,786140
Chromosome 8Assembled molecule32,779,014132,028,07732,779,014170
Chromosome 9Assembled molecule25,924,452125,746,96325,924,45270
Chromosome 10Assembled molecule21,112,358120,935,56121,112,358170
Chromosome 11Assembled molecule23,020,056122,790,89223,020,056140
Chromosome 12Assembled molecule21,111,546121,110,82221,111,54650
Chromosome 13Assembled molecule18,136,785118,118,18918,136,78590
Chromosome 14Assembled molecule16,515,823116,513,26316,515,82380
Chromosome 15Assembled molecule14,216,481114,183,07814,216,48190
Chromosome 17Assembled molecule11,905,176111,866,60811,905,17680
Chromosome 18Assembled molecule11,185,601111,167,02011,185,60180
Chromosome 19Assembled molecule11,861,617111,845,85611,861,61790
Chromosome 20Assembled molecule16,672,184116,002,85816,672,184100
Chromosome 21AllAssembled moleculeUnlocalized scaffolds8,188,65608,188,6562027,868,44707,868,4476,812,93706,812,937808000
Chromosome 22AllAssembled moleculeUnlocalized scaffolds6,056,78606,056,7863035,819,59705,819,5973,069,54003,069,54019019000
Chromosome 23Assembled molecule7,670,05917,606,5667,670,059140
Chromosome 24Assembled molecule8,775,18018,713,0828,775,180120
Chromosome 25Assembled molecule3,780,41712,750,0533,780,417120
Chromosome 26Assembled molecule6,727,81916,621,1106,727,819140
Chromosome 27Assembled molecule5,139,44514,853,7715,139,445140
Chromosome 28AllAssembled moleculeUnlocalized scaffolds6,330,61706,330,6172026,078,52206,078,5224,824,24604,824,24617017000
Chromosome ZAssembled molecule79,539,100172,640,49879,539,100790
Chromosome WAssembled molecule19,698,671117,359,84819,698,671440
Chromosome 29Assembled molecule1,085,0471552,5851,085,04730
unplacedAssembled molecule43,388,68750442,526,955123,6671370
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,856116,85616,85600